Sunday, January 26, 2014

Week 3


Here is my current progress on the Bothriolepis model.



Here is test video of a particle effect I would like to incorporate into the animation. Getting Maya to render transparent sprites is proving to be a challenge.
This is a chart describing the sort of shader I will be setting up for my ontogenic character. Vray has a blend material that accepts several separate materials and overlaps them. I'll have two separate textures for the adult and juvenile form, which will fade into one another under the control of the growth slider.


I figured out the positional specular highlight shader. I placed a conditional node between the samplerInfo node and the Vray material. The samplerInfo node sends the Y position of each rendered pixel to the conditional node. If the Y position is greater than 0: the specular amount of the Vray material is set to 5. If the Y position is 0 or below: the specular amount is set to 0.


Here is render test. Notice the faked Caustic lighting on the sand. Also notice the environmental fog that causes objects in the distance to assume the color of the water.



Sunday, January 19, 2014

Week 2

Here is my progress on the Bothriolepis base model






Here's a render test of (faked) caustic lighting




Here are some renders of an attempted position-dependent specular shader.




Sunday, January 12, 2014

Winter 2014 - Week 1 - Review

This week I returned to work on my thesis project. There are several administrative-type things going on behind the scenes (drafting requests for my expert panel, formatting my manuscript (thank you stefan), searching through spreadsheets of measurements, brushing up on allometric formulas, etc.).

I have been brushing up on how scientists study and quantify morphological change with the help of the book On Size and Life (1983). The most useful technique for assessing change is with an allometric formula. One chooses two measurable parts of an organism (x, y). These two measurements are then plots against one another. The following formula is used:

 y = bx^a

The exponent a reveals the type of growth occurring. If a=1, then one is observing isometric growth, two measurements changing at the same rate. If a < 1, then one is observing negative allometric growth (slower growth) and a > 1 is positive allometric growth (faster growth). 

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Related but unrelated to the thesis project, I have put together an animation demo reel. It highlights some of the characters I have animated over the last few years. 



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I have spent sometime working in Maya and Vray to simulate an underwater environment. Adding an environmental fog helps a great deal. Getting the surface to look convincingly reflective is still a struggle.



I've begun to model my character. Bothriolepis is encased in series of armor plates. Here I've been trying to add enough topology to allow these normally immobile plates to deform during 'development'. 




Source:

MacMahon, Thomas A., and John Tyler Bonner. On size and life. Scientific American Books, 1983.

Monday, January 6, 2014

DIGM 680 - Return from Winter Break

I have a few project updates.

Photogrammetry Video:
Here was a video I made for my DIGM workshop course. It summarizes my photogrammetry workflow.

Work on the Rig:
I've added a bit more functionality to the prototype ontogenic character rig. Right now there are sliders that correspond to different ontogenic changes (head widening, trunk widening, etc.). These are very rough, but they show the basic concept. These individual sliders are controlled by a global slider.

Texture Animating:
I've been dabbling within the rendering engine Vray. One of Vray's material nodes is a blending node which allows you to layer together several different shaders. This is a technique I can incorporate into the rig to transition between a juvenile color scheme and an adult color scheme. I  would also allow for layering in old-age wear-and-tear.

Thesis Formatting (Stefan)
I would like to make sure my manuscript conforms to Drexel's standards. I've looked around, and it seems that past students have set up Latex templates for setting up a Drexel thesis. 

http://blog.tremily.us/posts/drexel-thesis/

So far, I haven't had much luck with getting these to work in ShareLatex.

Potential Awards:
I've been looking for potential awards to submit to.

Lanzendorf PaleoArt Prize
     -Waiting for 2014 information

Red Stick International Animation Festival
     -Scientific Visualization category

Sci-An Award for Excellence in Scientific Animation

NSF's International Science and Engineering Visualization Challenge


Potential Talks:

AMI 2014 - Association of Medical Illustrators
     -Submissions Open: 11th November 2013
     -Submissions Deadline: 20th January 2014

GNSI 2014 Annual Conference - Guild of Natural Science Illustrators
     -March 1st - Deadline for entires
     -March 14 - Art selection and notification

IEEE VIS 2014

Tuesday, December 3, 2013

DIGM 680 - Shield to Sea

From Shield to Sea: Geological Field Trips From the 2011 Joint Meeting of the GSA


Late Devonian paleontology and paleoenvironments at Red Hill and other fossil sites in the Catskill Formation of north-central Pennsylvania
Edward B. Daeschler and Walter L. Cressler III


The stratified red beds of the Catskill Formation are conspicuous in road cut exposures on the Allegheny Plateau of north-central Pennsylvania. These sites have been central to recent investigations into the nature of Late Devonian continental ecosystems. By the Late Devonian, forests were widespread within seasonally well-watered depositional basins and the spread of plants on land from the late Silurian through the Devonian set the stage for the radiation of animals in both freshwater and terrestrial settings. A diverse assemblage of flora and fauna has been recovered from the Catskill Formation including progymnosperms, lycopsids, spermatophytes, zygopterid and stauripterid ferns, barinophytes, invertebrates, and invertebrate traces, and vertebrates such as placoderms, acanthodians, chondrichthyans, actinopterygians, and a variety of sarcopterygians including early tetrapods. Since the early 1990s, highway construction projects along the Route 15 (Interstate 99) have provided a new opportunity for exploration of the Catskill Formation in Lycoming and Tioga counties. The fauna along Route 15 are dominated by Bothriolepis sp. and Holoptychius sp. and also include Sauripterus taylori and an assortment of other interesting records. The most productive Catskill site, and the source of early tetrapod remains, is Red Hill in Clinton County. Red Hill presents a diverse and unique flora and fauna that is distinct from Route 15 sites, and also provides a spectacular section of the alluvial plain deposits of the Duncannon Member of the Catskill Formation.


Overview
-earliest paleontological investigations - 1830s and 1840s
-James Hall described pectoral fin of the rhizodontid sacropterygian Sauripterus taylori
-Charles Lyell passed through Blossburg in 1840 examined Catskill Formation
-additional fossil material was described by Leidy, Newberry, and Eastmann
-recent paleobiological investigations - 1993 ANSP
-Clinton, Lycoming, and Tioga Counties
-paleontological investigations have been closely linked with the construction of the railway system and the highway system
-Catskill Formation - composed of sand, silt, and mud deposited in a series of prograding deltas
-Catskill Delta Complex.
-clastic wedge derived from the middle to late Devonian Acadian Mountains shedding sediment westward and northwestward toward a shallow epicontinental sea in the foreland basin of the orogenic zone.
-studies have focused on the deltaic and alluvial plain facies at the top of the formation.
-Late Devonian
-time of major transitions in flora, fauna, and geobiological system
-forests were widespread within the seasonally well-watered depositional basins.
-dominant tree was the progymnosperm Archaeopteris (18 feet tall)
-first plant known with a bifacial cambium as in modern wood
-reproduced through spores
-Seed plants are first known from the Late Devonian (Rothwell, et al., 1989)
-opportunistic seed plants, growing in areas disturbed by fire, took advantage of the destruction of the widespread fern Rhacophyton (Cressler, 2006; Cressler et al., 2010a).
-Lycopsids were important swamp plants in the Late Devonian
-attaining the stature of small trees
-contributing to the thin coal seams known from the time
-small lycopsids are the precursors of the immense lycopsids that were the primary components of the Carboniferous coal swamps (Cressler and Pfefferkorn).
- Increased stature of the plants in the Late Devonian was accompanied by a concomitant increase in root zone depth, which led to increased paleosol development (Driese and Mora, 1993).
-Spread of plants on land - set the stage for the radiation of animals in both freshwater and terrestrial settings.
-large, suspension-feeding bivalves, Archandon catskillensis
- recorded sporadically from Catskill formation
-fossil terrestrial arthropods (first known from the Silurian)
-millipedes (Wilson et al., 2005)
-scorpions and a trigonotarbid arachnid  (Shear, 2000)
-no evidence of herbivory of living plant tissue during the Late Devonian.
-increased contribution of organic detritus by land plants to terrestrial and freshwater ecosystems during this time provided the primary productivity for these increasingly complex and diverse ecosystems
-Vertebrate assemblage
-placoderms, acanthodians, chondrichthyans, actinopterygians, range of sacropterygians
-at least three species of tetrapods
-two distinct faunas characterize the vertebrates from the Catskill Formation
-Holoptychius sp.
-Bothriolepis
-these appear to be organisms mainly restricted to lower alluvial plain - deltaic habitats.
-Some of the sarcopterygians (particularly the tetrapods) are lineages adapted for mobility in stream channels and shallow obstructed waters, a habitat that the well-vegetated alluvial plains of the Catskill Delta Complex seem to have provided.
Day 1


Road Log


Stop 1. Powys Curve
-fauna is dominated by the antiarch placoderm Bothriolepis sp.


The “Bothriolepis Problem”
Thomson and Thomas (2001) and Weems (2004) reviewed the taxonomic status of Bothriolepis from the Catskill Formation.
-it is clear from these papers that the diagnosis of species-level features in Bothriolepis from the Catskill Formation is a microcosm of the issues concerning species-level taxonomy of this cosmopolitan Late Devonian genus more broadly.

-Bothriolepis material from the Catskill Formation was first described by Leidy (1856) as Stenacanthus nitidus based on a distal portion of the pectoral appendage